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Cis-eQTLs across different cancer types

In cis-eQTL analysis, we identified 5,606,570 eQTL−gene pairs at FDR < 0.05 in 33 cancer types for users to search or browse.

 

e.g., "STAD"
e.g., "rs2351010"
e.g., "ERAP2"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
Gene symbol
Gene position (hg19)
Beta
t-stat
p-valule
Display
ACC rs6472562 chr8:71969878 A/C XKR9 chr8:71581600-71702606:+ 0.61 5.46 1.34E-6 Box Plot
ACC rs6472563 chr8:71969907 A/T XKR9 chr8:71581600-71702606:+ 0.61 5.46 1.34E-6 Box Plot
ACC rs6485455 chr11:43753725 C/G HSD17B12 chr11:43702108-43878167:+ 0.5 5.64 7.02E-7 Box Plot
ACC rs6497759 chr16:24801737 G/A SLC5A11 chr16:24857162-24922949:+ 1.05 5.48 1.24E-6 Box Plot
ACC rs650370 chr1:245201309 G/T EFCAB2 chr1:245133007-245290466:+ 0.69 6.24 8.01E-8 Box Plot
ACC rs6514004 chr20:44154657 A/G WFDC3 chr20:44376583-44420571:- 0.87 6.26 7.45E-8 Box Plot
ACC rs6514057 chr20:44387709 G/A WFDC3 chr20:44376583-44420571:- 0.91 6.58 2.32E-8 Box Plot
ACC rs6540769 chr1:213053820 G/A LQK1 chr1:213029947-213031480:- 0.84 9.73 2.63E-13 Box Plot
ACC rs6542866 chr2:99764592 T/C TSGA10 chr2:99613724-99771427:- 0.57 5.64 7.06E-7 Box Plot
ACC rs6542868 chr2:99782848 A/C TSGA10 chr2:99613724-99771427:- 0.57 5.59 8.51E-7 Box Plot
ACC rs654333 chr20:44367934 C/T WFDC3 chr20:44376583-44420571:- 0.87 6.45 3.77E-8 Box Plot
ACC rs6547752 chr2:88447437 G/A THNSL2 chr2:88469814-88486155:+ 0.82 6.48 3.37E-8 Box Plot
ACC rs6547870 chr2:28937601 G/C PPP1CB chr2:28974506-29025806:+ 0.58 5.29 2.47E-6 Box Plot
ACC rs6582289 chr12:75820605 C/T GLIPR1L2 chr12:75784850-75826468:+ 0.71 5.38 1.78E-6 Box Plot
ACC rs6591574 chr11:60139862 T/C MS4A14 chr11:60146003-60185229:+ 0.39 6.19 9.58E-8 Box Plot